???扮??DN4ADN4璧?婧?锛?娣卞害瑙f??涓??峰??????
????℃??灏?浠???璁轰?瀹?璺典袱涓??搴︼?绯荤?瑙f?????扮??DN4ADN4璧?婧????峰???规?锛?甯??╄????ㄥ??????版?????涓??惧?版??浣宠矾寰???
???扮??DN4ADN4璧?婧????稿?姒?蹇典?????/h3>
1.1???扮??DN璧?婧???瀹?涔?涓???瑕???/h3>
???扮?憋?TokyoInstituteofTechnology锛?绠?绉?IT锛????ユ?????椤跺???缁煎???х??绌跺??澶ю??稿?锛??ㄧ???╃?瀛︺??????绉?瀛︺??浜哄伐?鸿?界?棰????ユ??寮哄ぇ??瀛︽?????????DN4ADN4璧?婧?锛??冲?哄??缁??版??????缁???娴?搴??版???????借川缁??版???锛?涓?浠?涓烘?ユ????冲?ㄧ???????╀俊?????绌舵??渚?浜?瀹?璐电????ユ?版??????锛?涔?涓哄?诲???绌躲?????╁????????╂?????棰????????版??渚?浜??虹???
ADN4ADN4璧?婧????稿?浠峰?间??板?ㄤ互涓???涓??归???
?哄??缁?瀛︾??绌讹???杩?楂?????娴?搴?????????扮?辩??绌跺?㈤???藉?蹇????峰??澶ц?妯$???哄??缁??版????ㄤ???绌剁?剧???哄??????浼?澶??锋?х?????缁???娴?搴?涓?澶?缁?瀛﹀????锛????扮?卞?ㄥ??缁???娴?搴???????锋??棰???浼??匡??藉?瑙f??缁?????澶?绉???瀛?灞???搁?㈢??????锛?涓虹??????╁???绌舵??渚?绮惧???版????
浜哄伐?鸿?戒????╀俊???缁???锛???杩?AI绠?娉?瀵?DN?版???琛?????锛??????剧??璇????????╃???绛?????锛??ㄥ?ㄥ?诲?绉?????绐??淬??
1.2???扮??DN璧?婧????峰????寰?涓??版???
??????扮?卞苟???存?ュ???澶ц?妯$??ADN?版???锛?浣???杩?浠ヤ?娓?????互?峰???稿?宠?婧?锛?
瀹??圭??绌惰???涓??版???????扮?辩????绌跺?㈤????ature??Science绛?椤剁骇??????琛ㄧ??璁烘??涓???甯镐???甯︽?版????锛???互??杩?浠ヤ??瑰??峰??锛?PubMedCentral锛?PMC锛?锛???杩?璁烘????棰???绱???惧?扮?稿?崇??绌讹??ョ???版?????炬?ャ??DOI锛?DigitalObjectIdentifier锛?锛??ㄨ???涓??ユ??OI锛???杩?DOI?ヨ????★?濡?Crossref锛??峰???版???杞介?炬?ャ??
??绌跺?㈤??瀹?缃?锛??ㄥ????绌惰??浼??ㄤ釜浜虹?绔???GitHub涓??变韩?版????锛????存?ヨ??绯荤??绌惰???峰?????ユ???藉??版???涓??介????浣?骞冲?版???扮?变??ユ???藉??版???锛?濡?J-GAP??DNADataBankJapan锛?DDBJ锛?浠ュ???介???版???变韩骞冲?帮?濡?ENA??NCBI锛???浣?锛??ㄥ???版?????介??杩?浠ヤ??瑰??峰??锛?J-GAP锛??ユ???哄??缁??版???锛?锛???渚??ユ?????????哄??缁??版????ㄥ??涓????扮?辩??绌剁?稿?炽??
ENA锛?EuropeanNucleotideArchive锛?锛?娆ф床?稿??版???锛??ㄥ???介????浣?椤圭???版??????杩?姝ゅ钩?拌?峰????NCBI锛?缇??藉?藉????╂????俊??腑蹇?锛?锛???杩?NCBI???版???锛?濡?GenBank锛???绱㈢?稿?冲?哄??搴?????寮?婧??版??钩?颁???绌剁ぞ?洪?ㄥ?????扮?辩??绌跺?㈤???ㄥ?婧?骞冲?帮?濡?Zenodo??Figshare锛?涓??变韩?版????锛?????杩???绌剁ぞ?猴?濡?BioinformaticsStackExchange??GitHub锛??峰??锛?Zenodo锛?寮?婧??版????ㄥ钩?帮??ㄥ????绌惰??涓?浼??版????锛?????杩???绱㈠?抽???锛?濡???TokyoInstituteofTechnology+DNA??锛??惧?扮?稿?宠?婧???
GitHub锛??ㄥ????绌跺?㈤????itHub涓???渚?浠g?????版????锛????虫敞?稿?充?搴???
1.3濡?浣?????绛???涓??╃?ㄦ???扮??DN璧?婧?
涓轰?纭???版????璐ㄩ??涓????ㄦ?э???绌惰???ㄨ?峰?????扮??DN璧?婧??跺??靛惊浠ヤ?姝ラ?锛?
??纭???绌剁????纭????绌舵?瑰????锛????╂???稿?崇???版??????渚?濡?锛???瑕??哄??琛????杈炬?版??????ユ?句??哄??缁?娴?搴??稿?崇???版????????瑕???缁????版??????虫敞??缁???RNA娴?搴?锛?scRNA-seq锛??版????????瑕????╅?剁?圭??绌讹????ユ?捐???借川缁??版???????╃????版??????
楠?璇??版???ユ????????ч?垮??浠????楠?璇?????ユ?ユ??峰???版???浼??????╋??ヨ??《绾ф???????版???????辩??绌跺?㈤??瀹??瑰??甯????版????缁?杩??介??璁よ????版???锛?濡?NCBI??ENA锛????????版???煎?涓?宸ュ?锋????涓?????????版???????戒娇?ㄤ??????煎?锛?濡?FASTQ??BAM??CSV绛?锛?锛???纭?????ㄧ?????╀俊???宸ュ?凤?濡?HISAT2??STAR??R/Bioconductor锛??藉??煎???
甯葛???瑙???宸ュ?峰??????哄??缁?娴?搴?????锛?GATK??Picard??Samtools????缁???????锛?Seurat??Scanpy??CellRanger??????哥?借川缁?????锛?MaxQuant??MudPIT????瑙??т?浼︾???????ㄥ??ADN?版?????浜虹被?锋??????靛?浼︾??瑙???锛?濡?GDPR???ユ???版????ゆ?锛???
?ㄤ娇?ㄥ??搴?锛?纭???版?????︾?杩??垮??????绛剧讲?稿?虫??????璁????垮?????璁稿?????版????????
???扮??DN4ADN4璧?婧???瀹????峰??涓?搴??ㄧ???/h3>
2.1?蜂??峰??姝ヰ???楠わ?浠?璁烘???版?版????
浠ヤ?绡??充??????扮?辩??绌跺?㈤??寮???????缁???娴?搴??版??????涓轰?锛???绌惰???????т互涓?娴?绋??峰???版???
?ユ??OI涓??版???炬?ュ?ㄨ???涓??惧??OI锛?濡?锛?10.1038/s41598-023-45678-5锛?锛???杩?Crossref?ヨ??版????锛?璁块???https://doi.org/杈???OI锛??ョ????DataAvailability???ㄥ??锛???甯镐??炬?ュ??enodo??Figshare??
涓?杞芥?版?????规???炬?ヤ?杞芥?版????锛???甯镐负ZIP??TAR?煎?锛?锛?瑙e?????峰??锛?FASTQ??浠讹???缁???娴?搴???濮??版???????娉ㄦ??浠讹?濡?cellbarcodes.txt??featurebars.txt锛??????版??〃锛?metadata.csv锛????????淇℃?????锋???ユ?绛?锛???
棰?澶???涓?????浣跨?ㄧ???╀俊???宸ュ?疯?琛???姝ュ???锛?#绀轰?锛?浣跨??ellRanger杩?琛???缁???RNA-seq澶???cellrangercount--id=TIT_singlecell--fastq/path/to/Fastq_files--sampleTIT_sample--refhg38
??????杈??哄?????
FeatureBarcodeMatrix锛?FBM锛??ㄤ?Seurat????锛?????????版???濡?UMAP??t-SNE锛???
2.2???扮??DN璧?婧???瀹???搴??ㄥ?烘??/h3>
2.2.1?诲???绌讹??剧???哄??缁?瀛?/h3>
???扮?辩??绌跺?㈤???ㄧ?????哄??缁???绌朵腑???ヤ???瑕?浣?????ㄥ???版???????ㄤ?锛?
????浜?????绫伙???杩???缁???娴?搴??版?????绌惰????????跨?ょ???????ヤ?缇わ?甯???╀釜浣???娌荤???????╄?????哄?讹??????哄??绐???涓????╁??搴????宠??锛?涓烘?拌????????渚?渚?????
瀹???姝ラ?锛?
?峰????????缁????版????锛?濡??ヨ?????扮?辩???虹???锋???版?????浣跨??eurat杩?琛???缁村????锛?UMAP锛???缁???TCGA?版????锛?寤虹?棰?娴?妯″??锛?濡????烘.????绁?缁?缃?缁?锛???
2.2.2???╀俊???涓?AI缁???
???扮?扁?わ???I涓????╀俊???????ヤ氦??棰?????娣卞??绉?疮锛??ㄥ???版???????ㄤ?锛?
?哄??琛ㄨ揪棰?娴?锛?璁??娣卞害瀛︿?妯″??锛?濡?Transformer锛?棰?娴??剧????椋??┿?????借川缁???棰?娴?锛?缁???ADN?版???AlphaFold锛??ㄦ?????借川缁?????
宸ュ?锋?ㄨ??锛?
PyTorch+TensorFlow锛?璁??绁?缁?缃?缁?妯″????AlphaFold2锛?缁???ADN搴???棰?娴????借川缁?????
2.3???扮??????涓?瑙e?虫?规?
????瑙e?虫?规??版???煎?涓??煎?浣跨?ㄥ伐?峰?fastq-dump锛?SRA宸ュ?凤?杞??㈡?煎?锛???浣跨??wa瀵归???缂轰????版?????ㄨˉ???濡??锋???ユ???娌荤???规?绛?锛?锛?????绯荤??绌惰???峰??瀹??存?版??????璁$?璧?婧?????浣跨?ㄤ?骞冲?帮?濡?GoogleColab??AWS锛?????????锛??????╄交??绾у伐?凤?濡?R锛???
浼︾??涓?娉?寰????堕?靛??版??娇?ㄥ??璁???垮????????????版????????
2.4濡?浣???缁??存?颁?娣卞????绌?/h3>
?虫敞??绌跺?ㄦ????杩????扮?卞?缃?锛?www.tit.ac.jp锛?????绌惰??涓?汉??瀹??濡?Twitter??ResearchGate锛??峰?????版?版????????涓??介????浣?涓??朵???绌舵?烘??锛?濡?KEIO??浜??藉ぇ瀛︼???浣?锛??变韩?版???璧?婧???寮????????版????濡?????娉??峰????????扮?辨?版???????杩????????????浣?椤圭??ˉ???版????
缁?璁猴????扮??DN璧?婧??????ヤ?????/h3>
???扮??DN4ADN4璧?婧?涓?浠?????绌惰????瀹?搴?锛?涔????ㄥ?ㄥ?诲??????╂??????浜哄伐?鸿?藉??灞????抽??????杩?绯荤????峰???规?????????宸ュ?烽???╀互??涓ヨ皑??浼︾??瀹???锛???绌惰???藉?灏?杩?浜??版??浆??涓哄???搴?????ㄥ?ㄧ?瀛﹁?姝ャ?????ワ?????AI涓????╀俊?????娣卞害????锛????扮?辩???版????村???鸿?藉???版???′??ㄧ????绌惰??锛?涓烘???ョ???荤???╁?介?鸿矾??
寤鸿?锛?
瀹?????椤炬???扮?辩????绌跺?ㄦ??锛????惰?峰???版?版????涓???绌剁ぞ?轰氦娴?锛??变韩缁?楠?涓????般?????╁?????????╀俊???宸ュ?凤??????版????????????
??缁?????锛??ㄤ娇?ㄤ换浣??版???婧??讹?璇风‘淇??靛?娉?寰?娉?瑙?锛?骞跺????版????????????????濡????磋?缁????版???峰??????锛??????????扮?卞??规??妗f????绯荤?稿?崇??绌跺?㈤????
?″?锛?缃???蹇?(RM6y3visXO3P0rfghUiorrz68w7FQEt)
-
*ST?????????浼?绔?妗? ???璧???????储璧??洪??浠i??娓???????????宸ㄥご瑙???????姝ゅ?冲郊?? ????浜т??惧??澶?璧板己 ???瑰???告定瓒?10%缁??????叉?伴?璇??告?舵??/span> ????/span> 2026-07-18 17:43:38
-
?????′唤?ц????昏?寮?宸???涓?汉????杈??? ?卞ぇ璇??稿?????荤????崇?棰?璀︾ず? ??宸ョ???涓??颁????板?浣????т?瀹???琚?矗浠ゆ?存??/span>绾㈡???伴??/span> ???冲己 2026-07-16 06:54:38
-
2026-07-05 00:54:38
-
2026-07-17 10:34:38
-
2026-07-14 06:49:38
-
2026-07-14 08:58:38
-
2026-07-04 02:44:38
